Hophage
WebNational Center for Biotechnology Information Web16 sep. 2024 · We present HoPhage (Host of Phage) to identify the host of a given phage fragment from metavirome data at the genus level. HoPhage integrates two modules …
Hophage
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Web24 nov. 2024 · To avoid manually creating negative pairs, the host prediction task can be formulated as a multi-class classification problem, where the input set contains the virus … Web12 aug. 2024 · HoPhage integrates two modules using a deep learning algorithm and a Markov chain model, respectively. HoPhage achieves 47.90% and 82.47% mean accuracy at the genus and phylum levels for ∼1-kb long artificial phage fragments when predicting host among 50 genera, representing 7.54–20.22% and 13.55–24.31% improvement, …
WebHoPhage (Host of Phage) is a computational tool that integrates two modules respectively using the deep learning and the Markov chain model to identify the host of a given …
Webthe HMM alignments and train a multi-class random forest model. HoPhage [6], another multi-class classification model-based host prediction tool, uses deep learning and Markov chain algorithm. They use the CDS of each candidate host genome to construct a Markov chain model and then calculate the likelihood of query phage fragments infecting Web12 aug. 2024 · HoPhage integrates two modules using a deep learning algorithm and a Markov chain model, respectively. HoPhage achieves 47.90% and 82.47% mean accuracy at the genus and phylum levels for ∼1-kb long artificial phage fragments when predicting host among 50 genera, representing 7.54–20.22% and 13.55–24.31% improvement, …
Web17 aug. 2024 · HoPhage: an ab initio tool for identifying hosts of phage fragments from metaviromes. Tan et al. Bioinformatics. Sparse least trimmed squares regression with compositional covariates for high dimensional data. Monti and Filzmoser. Bioinformatics. Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database …
Web1 jan. 2024 · Summary. We present HoPhage (Host of Phage) to identify the host of a given phage fragment from metavirome data at the genus level. HoPhage integrates two modules using a deep learning algorithm and a Markov chain model, respectively. HoPhage achieves 47.90% and 82.47% mean accuracy at the genus and phylum levels for ~1-kb long … electric rice cooker price in big bazaarWebBibliographic details on HoPhage: an ab initio tool for identifying hosts of phage fragments from metaviromes. We are hiring! We are looking for three additional members to join the … electric rice cooker rice overnightWeb3 jan. 2024 · HoPhage integrates two modules using a deep learning algorithm and a Markov chain model, respectively. HoPhage achieves 47.90% and 82.47% mean … electric rice cooker testingWeb1 HoPhage: an ab initio tool for identifying hosts of 2 phage fragments from metaviromes 3 4 Jie Tan, Zhencheng Fang, Shufang Wu, Qian Guo, Xiaoqing Jiang and Huaiqiu Zhu* 5 … electric rice cooker marketHoPhage(Host of Phage) is a computational tool that integrates two modules respectively using the deep learning and the Markov chain model to identify the host of a given phage fragment from metagenome or metavirome data at the genus level. How to use HoPhage Docker. HoPhage is … Meer weergeven HoPhage is developed by Python. It was released as a Docker image, so you can easily use HoPhage by installing Docker on your local machine and downloading the pre-built … Meer weergeven The codes of HoPhage are implemented on Python 3.6. To use it, Python 3.6 together with the following packages is required. 1. Python 3.6 1.1. numpy 1.17.4 1.2. pandas 0.25.3 1.3. biopython 1.71 1.4. llvmlite … Meer weergeven Before using HoPhage to predict the host of phage fragments, you need to do some data preparation, 1. PPR-MetaPPR-Meta is designed to identify metagenomic sequences as phages, chromosomes or plasmids. If … Meer weergeven food tysonsWeb1 HoPhage: an ab initio tool for identifying hosts of 2 phage fragments from metaviromes 3 4 Jie Tan, Zhencheng Fang, Shufang Wu, Qian Guo, Xiaoqing Jiang and Huaiqiu Zhu* 5 State Key Laboratory for Turbulence and Complex Systems, Department of Biomedical Engineering, College of 6 Engineering and Center for Quantitative Biology, Peking … electric rice cooker prestigeWeb27 nov. 2024 · HoPhage integrates two modules using the deep learning algorithms and the Markov chain model, respectively. By testing on both the artificial benchmark dataset of … food types ppt